publications

  1. Strand Invasion of DNA Quadruplexes by PNA: Comparison of Homologous and Complementary Hybridization. Gupta Anisha; Lee Ling-Ling; Roy Subhadeep; Tanious Farial A; Wilson W David; Ly Danith H; Armitage Bruce A. Chembiochem : a European journal of chemical biology (2013). DOI: 10.1002/cbic.201300263 {Abstract]
  2. Antitumor Effects of EGFR Antisense Guanidine-Based Peptide Nucleic Acids in Cancer Models. Sufi M. Thomas, Bichismita Sahu, Srinivas Rapireddy, Raman Bahal, Sarah E. Wheeler, Eva M. Procopio, Joseph Kim, Sonali C. Joyce, Sarah Contrucci, Yun Wang, Simion I. Chiosea, Kira L. Lathrop, Simon Watkins, Jennifer R. Grandis, Bruce A. Armitage, and Danith H. Ly. ACS Chemical Biology (2013), 8(2), 345-352. DOI: 10.1021/cb3003946 [Abstract]
  3. High affinity γPNA sandwich hybridization assay for rapid detection of short nucleic acid targets with single mismatch discrimination. Johnathan M. Goldman, Li Ang Zhang, Arunava Manna, Bruce A. Armitage, Danith H. Ly, and James W. Schneider. Biomacromolecules (2013), 14(7), 2253-2261. DOI: 10.1021/bm400388a [Abstract]
  4. Twisted Cyanines: A Non-Planar Fluorogenic Dye with Superior Photostability and its Use in a Protein-Based Fluoromodule Shank, Nathaniel I.; Pham, Ha H.; Waggoner, Alan S.; Armitage, Bruce A. Journal of the American Chemical Society (2013), 135(1), 242-251. DOI: 10.1021/ja308629w [Abstract]
  5. A Variable Light Domain Fluorogen Activating Protein Homodimerizes To Activate Dimethylindole Red. Senutovitch, Nina; Stanfield, Robyn L.; Bhattacharyya, Shantanu; Rule, Gordon S.; Wilson, Ian A.; Armitage, Bruce A.; Waggoner, Alan S.; Berget, Peter B. Biochemistry (2012), 51(12), 2471-2485. DOI:10.1021/bi201422g [Abstract]
  6. Imaging of RNA in live cells. Armitage, Bruce A. Current Opinion in Chemical Biology (2011), 15(6), 806-812. DOI:10.1016/j.cbpa.2011.10.006 [Abstract]
  7. Wavelength Dependence of the Fluorescence Quenching Efficiency of Nearby Dyes by Gold Nanoclusters and Nanoparticles: The Roles of Spectral Overlap and Particle Size. Chowdhury, Sanchari; Wu, Zhikun; Jaquins-Gerstl, Andrea; Liu, Shengpeng; Dembska, Anna; Armitage, Bruce A.; Jin, Rongchao; Peteanu, Linda A. Journal of Physical Chemistry C (2011), 115(41), 20105-20112. DOI:10.1021/jp204836w [Abstract]
  8. Fluorescent DNA Nanotags Featuring Covalently Attached Intercalating Dyes: Synthesis, Antibody Conjugation, and Intracellular Imaging. Stadler, Andrea L.; Delos Santos, Junriz O.; Stensrud, Elizabeth S.; Dembska, Anna; Silva, Gloria L.; Liu, Shengpeng; Shank, Nathaniel I.; Kunttas-Tatli, Ezgi; Sobers, Courtney J.; Gramlich, Philipp M. E.; et al. Bioconjugate Chemistry (2011), 22(8), 1491-1502. DOI:10.1021/bc100485f [Abstract]
  9. Kinetic discrimination in recognition of DNA quadruplex targets by guanine-rich heteroquadruplex-forming PNA probes. Roy, Subhadeep; Zanotti, Kimberly J.; Murphy, Connor T.; Tanious, Farial A.; Wilson, W. David; Ly, Danith H.; Armitage, Bruce A. Chemical Communications (Cambridge, United Kingdom) (2011), 47(30), 8524-8526. DOI:10.1039/c1cc12805a [Abstract]
  10. Synthesis and Characterization of Conformationally Preorganized, (R)-Diethylene Glycol-Containing γ-Peptide Nucleic Acids with Superior Hybridization Properties and Water Solubility. Sahu, Bichismita; Sacui, Iulia; Rapireddy, Srinivas; Zanotti, Kimberly J.; Bahal, Raman; Armitage, Bruce A.; Ly, Danith H. Journal of Organic Chemistry (2011), 76(14), 5614-5627. DOI:10.1021/jo200482d [Abstract]
  11. Blue fluorescent dye-protein complexes based on fluorogenic cyanine dyes and single chain antibody fragments. Zanotti, Kimberly J.; Silva, Gloria L.; Creeger, Yehuda; Robertson, Kelly L.; Waggoner, Alan S.; Berget, Peter B.; Armitage, Bruce A. Organic & Biomolecular Chemistry (2011), 9(4), 1012-1020. DOI:10.1039/c0ob00444h [Abstract]
  12. Substituent Effects on the Assembly of Helical Cyanine Dye Aggregates in the Minor Groove of a DNA Template. Stadler, Andrea L.; Renikuntla, Babu Rao; Yaron, David; Fang, Adam S.; Armitage, Bruce A. Langmuir (2011), 27(4), 1472-1479. DOI:10.1021/la104329c [Abstract]
  13. Telomeric repeat mutagenicity in human somatic cells is modulated by repeat orientation and G-quadruplex stability. Damerla, Rama Rao; Knickelbein, Kelly E.; Kepchia, Devin; Jackson, Abbe; Armitage, Bruce A.; Eckert, Kristin A.;Opresko, Patricia L. DNA Repair (2010), 9(11), 1119-1129. DOI:10.1016/j.dnarep.2010.07.014 [Abstract]
  14. Loop and Backbone Modifications of Peptide Nucleic Acid Improve G-Quadruplex Binding Selectivity. Lusvarghi, Sabrina; Murphy, Connor T.; Roy, Subhadeep; Tanious, Farial A.; Sacui, Iulia; Wilson, W. David; Ly, Danith H.; Armitage, Bruce A. Journal of the American Chemical Society (2009), 131(51), 18415-18424. DOI:10.1021/ja907250j [Abstract]
  15. Enhanced Photostability of Genetically Encodable Fluoromodules Based on Fluorogenic Cyanine Dyes and a Promiscuous Protein Partner. Shank, Nathaniel I.; Zanotti, Kimberly J.; Lanni, Frederick; Berget, Peter B.; Armitage, Bruce A. Journal of the American Chemical Society (2009), 131(36), 12960-12969. DOI:10.1021/ja9016864 [Abstract]
  16. Peptide nucleic acids (PNAs). Achim, Catalina; Armitage, Bruce A.; Ly, Danith H.; Schneider, James W. Edited By: Begley, Tadhg P. Wiley Encyclopedia of Chemical Biology (2009), 3, 588-597. DOI:10.1002/9780470048672.wecb435
  17. Refined multivalent display of bacterial spore-binding peptides. Lusvarghi, Sabrina; Kim, Jenny Morana; Creeger, Yehuda; Armitage, Bruce Alan. Organic & Biomolecular Chemistry (2009), 7(9), 1815-1820. DOI:10.1039/b820013k [Abstract]
  18. Cyanine dye-nucleic acid interactions. Armitage, Bruce A. Topics in Heterocyclic Chemistry (2008), 14(Heterocyclic Polymethine Dyes), 11-29. DOI:10.1007/7081_2007_109 [Abstract]
  19. Fluorescent DNA Nanotags Based on a Self-Assembled DNA Tetrahedron. Ozhalici-Unal, Hayriye; Armitage, Bruce A. ACS Nano (2009), 3(2), 425-433. DOI:10.1021/nn800727x [Abstract]
  20. Molecular engineering of torsional potentials in fluorogenic dyes via electronic substituent effects. Ediz, Volkan; Lee, Jihoon L.; Armitage, Bruce A.; Yaron, David. Journal of Physical Chemistry A (2008), 112(40), 9692-9701. DOI:10.1021/jp805546s [Abstract]
  21. A Rainbow of Fluoromodules: A Promiscuous scFv Protein Binds to and Activates a Diverse Set of Fluorogenic Cyanine Dyes. Ozhalici-Unal, Hayriye; Pow, Crystal Lee; Marks, Sarah A.; Jesper, Lawrence D.; Silva, Gloria L.; Shank, Nathaniel I.; Jones, Elizabeth W.; Burnette, James M., III; Berget, Peter B.; Armitage, Bruce A. Journal of the American Chemical Society (2008), 130(38), 12620-12621. DOI:10.1021/ja805042p [Abstract]
  22. Synthesis of New Fluorogenic Cyanine Dyes and Incorporation into RNA Fluoromodules. Constantin, Tudor P.; Silva, Gloria L.; Robertson, Kelly L.; Hamilton, Tamara P.; Fague, Kaitlin; Waggoner, Alan S.; Armitage, Bruce A. Organic Letters (2008), 10(8), 1561-1564. DOI:10.1021/ol702920e [Abstract]
  23. An Enlightening Structure-Function Relationship. Armitage, Bruce A.; Berget, Peter B. Science (Washington, DC, United States) (2008), 319(5867), 1195-1196. DOI:10.1126/science.1155093 [Abstract]
  24. Strand Invasion of Mixed-Sequence B-DNA by Acridine-Linked, γ-Peptide Nucleic Acid (γ-PNA). Rapireddy, Srinivas; He, Gaofei; Roy, Subhadeep; Armitage, Bruce A.; Ly, Danith H. Journal of the American Chemical Society (2007), 129(50), 15596-15600. DOI:10.1021/ja074886j [Abstract]
  25. High-Affinity Homologous Peptide Nucleic Acid Probes for Targeting a Quadruplex-Forming Sequence from a MYC Promoter Element. Roy, Subhadeep; Tanious, Farial A.; Wilson, W. David; Ly, Danith H.; Armitage, Bruce A. Biochemistry (2007), 46(37), 10433-10443. [Abstract]
  26. Experimental and Computational Investigation of Unsymmetrical Cyanine Dyes: Understanding Torsionally Responsive Fluorogenic Dyes. Silva, Gloria L.; Ediz, Volkan; Yaron, David; Armitage, Bruce A. Journal of the American Chemical Society (2007), 129(17), 5710-5718. [Abstract]
  27. Fluorescent DNA Nanotags: Supramolecular Fluorescent Labels Based on Intercalating Dye Arrays Assembled on Nanostructured DNA Templates. Benvin, A. L.; Creeger, Y.; Fisher, G. W.; Ballou, B.; Waggoner, A. S.; Armitage, B. A. Journal of the American Chemical Society (2007); 129; 2025-2034. [Abstract]
  28. A structural model for cyanine dyes templated into the minor groove of DNA. Tomlinson, Aimee; Frezza, Brian; Kofke, Matthew; Wang, Miaomiao; Armitage, Bruce A.; Yaron, David. Chemical Physics (2006), 325(1), 36-47. [Abstract]
  29. DNA-templated assembly of helical multichromophore aggregates. Armitage, Bruce A.. Molecular and Supramolecular Photochemistry (2006), 14(Organic Photochemistry and Photophysics), 255-287.
  30. Fluorescent PNA Probes as Hybridization Labels for Biological RNA. Robertson, Kelly L.; Yu, Liping; Armitage, Bruce A.; Lopez, A. Javier; Peteanu, Linda A. Biochemistry (2006), 45(19), 6066-6074. [Abstract]
  31. Hybridization of Complementary and Homologous Peptide Nucleic Acid Oligomers to a Guanine Quadruplex-Forming RNA. Marin, Violeta L.; Armitage, Bruce A.. Biochemistry (2006), 45(6), 1745-1754. [Abstract]
  32. 1H NMR and Optical Spectroscopic Investigation of the Sequence-Dependent Dimerization of a Symmetrical Cyanine Dye in the DNA Minor Groove. Hannah, Kristen C.; Gil, Roberto R.; Armitage, Bruce A.. Biochemistry (2005), 44(48), 15924-15929. [Abstract]
  33. Reversible Association of PNA-Terminated Poly(2-hydroxyethyl acrylate) from ATRP. Wang, Ying; Armitage, Bruce A.; Berry, Guy C. Macromolecules (2005), 38(14), 5846-5848. [Abstract]
  34. RNA Guanine Quadruplex Invasion by Complementary and Homologous PNA Probes. Marin, Violeta L.; Armitage, Bruce A.. Journal of the American Chemical Society (2005), 127(22), 8032-8033. [Abstract]
  35. Role Reversal in a Supramolecular Assembly: a Chiral Cyanine Dye Controls the Helicity of a Peptide-Nucleic Acid Duplex. Renikuntla, Babu Rao; Armitage, Bruce A.. Langmuir (2005), 21(12), 5362-5366. [Abstract]
  36. Cyanine dye-DNA interactions: intercalation, groove binding, and aggregation. Armitage, Bruce A.. Topics in Current Chemistry (2005), 253(DNA Binders and Related Subjects), 55-76. [Abstract]
  37. Quadruplex Formation by a Guanine-Rich PNA Oligomer. Datta, Bhaskar; Bier, Mark E.; Roy, Subhadeep; Armitage, Bruce A.. Journal of the American Chemical Society (2005), 127(12), 4199-4207. [Abstract]
  38. Effect of PNA Backbone Modifications on Cyanine Dye Binding to PNA-DNA Duplexes Investigated by Optical Spectroscopy and Molecular Dynamics Simulations. Dilek, Isil; Madrid, Marcela; Singh, Rojendra; Urrea, Christian P.; Armitage, Bruce A.. Journal of the American Chemical Society (2005), 127(10), 3339-3345. [Abstract]
  39. Cubic liquid-crystalline nanoparticles. Yang, Da; Armitage, Bruce; Marder, Seth R. School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA. Angewandte Chemie, International Edition (2004), 43(34), 4402-4409. [Abstract]
  40. DNA-Templated Assembly of Helical Cyanine Dye Aggregates: A Supramolecular Chain Polymerization. Hannah, Kristen C.; Armitage, Bruce A.. Accounts of Chemical Research (2004), 37(11), 845-853. [Abstract]
  41. Effect of LNA modifications on small molecule binding to nucleic acids. Marin, Violeta; Hansen, Henrik F.; Koch, Troels; Armitage, Bruce A.. Journal of Biomolecular Structure & Dynamics (2003), Volume Date 2004, 21(6), 841-850. [Abstract]
  42. Recent advances in the development of peptide nucleic acid as a gene-targeted drug. Marin, Violeta L.; Roy, Subhadeep; Armitage, Bruce A.. Expert Opinion on Biological Therapy (2004), 4(3), 337-348. [Abstract]
  43. Improved photostability and fluorescence properties through polyfluorination of a cyanine dye. Renikuntla, Babu Rao; Rose, Heather C.; Eldo, Joby; Waggoner, Alan S.; Armitage, Bruce A.. Organic Letters (2004), 6(6), 909-912. [Abstract]
  44. A Recoverable Enzymatic Microgel Based on Biomolecular Recognition. Cao, Rong; Gu, Zhenyu; Patterson, Gary D.; Armitage, Bruce A.. Journal of the American Chemical Society (2004), 126(3), 726-727. [Abstract]
  45. Self-assembled supramolecular microgels: Fractal structure and aggregation mechanism. Gu, Zhenyu; Patterson, Gary; Cao, Rong; Armitage, Bruce. Journal of Polymer Science, Part B: Polymer Physics (2003), 41(23), 3037-3046. [Abstract]
  46. Synthesis and characterization of thermoreversible biopolymer microgels based on hydrogen bonded nucleobase pairing. Cao, Rong; Gu, Zhenyu; Hsu, Lorraine; Patterson, Gary D.; Armitage, Bruce A.. Journal of the American Chemical Society (2003), 125(34), 10250-10256. [Abstract]
  47. Detection of single nucleotide mismatches via fluorescent polymer superquenching. Kushon, Stuart A.; Bradford, Kirsten; Marin, Violeta; Suhrada, Chris; Armitage, Bruce A.; McBranch, Duncan; Whitten, David. Langmuir (2003), 19(16), 6456-6464. [Abstract]
  48. Electrostatic Contributions to Cyanine Dye Aggregation on Peptide Nucleic Acid Templates. Wang, Miaomiao; Dilek, Isil; Armitage, Bruce A.. Langmuir (2003), 19(16), 6449-6455. [Abstract]
  49. Formation of a PNA2-DNA2 Hybrid Quadruplex. Datta, Bhaskar; Schmitt, Christoph; Armitage, Bruce A.. Journal of the American Chemical Society (2003), 125(14), 4111-4118. [Abstract]
  50. The impact of nucleic acid secondary structure on PNA hybridization. Armitage, Bruce A. Drug Discovery Today (2003), 8(5), 222-228. [Abstract]
  51. 10 Bioinspired organic chemistry. Armitage, Bruce A.. Annual Reports on the Progress of Chemistry, Section B: Organic Chemistry (2002), 98 503-541. [Abstract]
  52. Colorimetric detection of PNA-DNA hybridization using cyanine dyes. Wang, Miaomiao; Armitage, Bruce A.. Methods in Molecular Biology (Totowa, NJ, United States) (2002), 208(Peptide Nucleic Acids), 131-142.
  53. Helical Aggregation of Cyanine Dyes on DNA Templates: Effect of Dye Structure on Formation of Homo- and Heteroaggregates. Garoff, Rachel A.; Litzinger, Elizabeth A.; Connor, Rebecca E.; Fishman, Irene; Armitage, Bruce A.. Langmuir (2002), 18(16), 6330-6337. [Abstract]
  54. Bioinspired organic chemistry. Armitage, Bruce A.. Annual Reports on the Progress of Chemistry, Section B: Organic Chemistry (2001), 97 483-513. [Abstract]
  55. The minor groove of DNA as a template for self-assembly of helical aggregates of cyanine dye molecules. Yaron, David; Armitage, Bruce A.; Raheem, Izzat; Kushon, Stuart; Seifert, Jennifer L. MCLC S&T, Section B: Nonlinear Optics (2000), 26(1-3), 257-264.
  56. Effect of Secondary Structure on the Thermodynamics and Kinetics of PNA Hybridization to DNA Hairpins. Kushon, Stuart A.; Jordan, Jason P.; Seifert, Jennifer L.; Nielsen, Henrik; Nielsen, Peter E.; Armitage, Bruce A.. Journal of the American Chemical Society (2001), 123(44), 10805-10813. [Abstract]
  57. Hybridization of PNA to Structured DNA Targets: Quadruplex Invasion and the Overhang Effect. Datta, Bhaskar; Armitage, Bruce A.. Journal of the American Chemical Society (2001), 123(39), 9612-9619. [Abstract]
  58. Recognition of ATGA Sequences by the Unfused Aromatic Dication DB293 Forming Stacked Dimers in the DNA Minor Groove. Bailly, Christian; Tardy, Christelle; Wang, Lei; Armitage, Bruce; Hopkins, Katherine; Kumar, Arvind; Schuster, Gary B.; Boykin, David W.; Wilson, W. David. INSERM U-524 et Laboratoire de Pharmacologie Antitumorale du Centre Oscar Lambret, IRCL, Lille, Fr. Biochemistry (2001), 40(33), 9770-9779. [Abstract]
  59. Investigation of DNA binding modes for a symmetrical cyanine dye trication: effect of DNA sequence and structure. Cao, Rong; Venezia, Carl F.; Armitage, Bruce A.. Journal of Biomolecular Structure & Dynamics (2001), 18(6), 844-856.
  60. Bioinspired organic chemistry. Armitage, Bruce A.. Annual Reports on the Progress of Chemistry, Section B: Organic Chemistry (2000), 96 187-229. [Abstract]
  61. DNA-Templated Formation of a Helical Cyanine Dye J-Aggregate. Wang, Miaomiao; Silva, Gloria L.; Armitage, Bruce A.. Journal of the American Chemical Society (2000), 122(41), 9977-9986. [Abstract]
  62. Spontaneous Assembly of Helical Cyanine Dye Aggregates on DNA Nanotemplates. Seifert, Jennifer L.; Connor, Rebecca E.; Kushon, Stuart A.; Wang, Miaomiao; Armitage, Bruce A.. Journal of the American Chemical Society (1999), 121(13), 2987-2995. [Abstract]
  63. Molecular Recognition of PNA-Containing Hybrids: Spontaneous Assembly of Helical Cyanine Dye Aggregates on PNA Templates. Smith, Jeffrey O.; Olson, Darren A.; Armitage, Bruce A.. Journal of the American Chemical Society (1999), 121(12), 2686-2695. [Abstract]