the Llinás Group
research software development group members professor Llinás publications links


ABACUS, a Direct Method for Protein NMR Structure Computation via Assembly of Fragments A. Grishaev1, C. A. Steren1, A. Pineda-Lucena2, C. Arrowsmith2 & M. Llinás1* (submitted)

Grishaev A, Llinas M. BACUS: A Bayesian protocol for the identification of protein NOESY spectra via unassigned spin systems(*). J Biomol NMR. 2004 Jan;28(1):1-10.

Grishaev A, Llinas M. Sorting signals from protein NMR spectra: SPI, a Bayesian protocol for uncovering spin systems. J Biomol NMR. 2002 Nov;24(3):203-13.

J.T. Douglas, P.D. von Haller, M. Gehrmann, M. Llinás & J. Schaller (2002). "The two-domain NK1 fragment of plasminogen: folding, ligand binding, and thermal stability profile". Biochemistry (in the press).

M. Gehrmann, K. Briknarová, L. Bányai, L. Patthy & M. Llinás (2002) "The col-1 module of human matrix metalloproteinase-2 (MMP-2): structural/functional relatedness between gelatin-binding fibronectin type II modules and lysine-binding kringle domains". Biol. Chem. 383, 137-148.

L. Örning, , P.M. Fischer, C.-K. Hu, E. Agner, M. Engebretsen, M. Husbyn, L.B. Petersen, U. Ørvim, M. Llinás, & K. Sakariassen (2002) "A cyclic pentapeptide derived from the second EGF-like domain of factor VII is an inhibitor of tissue factor dependent coagulation and thrombus formation" Thrombosis and Haemostasis 87, 13-21.

V.O. Lewis, M.S. O'Reilly, M. Gehrmann, M. Llinás, J. Schaller, & L. Weissbach (2001). "Inhibition of Tumor Growth by Plasminogen-Related Protein B." Anticancer Res. 21, 2287-2291.

O.A. Ozhogina, M. Trexler, L. Bányai, M. Llinás & L. Patthy (2001) "Origin of fibronectin type II (FN2) modules: Structural analyses of distantly-related members of the kringle-family identify the kringle-domain of neurotrypsin as a potential link between FN2 domains and kringles." Protein Sc. 10, 2114-2122.

K. Briknarová, M. Gehrmann, L. Bányai, H. Tordai, L. Patthy & M. Llinás (2001) "Gelatin Binding Region of Human Matrix Metalloproteinase 2: Solution Structure, Dynamics and Function of the Col-23 Two-Domain Construct." J. Biol. Chem. 276, 27613-27621.

K. Briknarová, S. Takayama, L. Brive, M.L. Havert, D.A. Knee, J.Velasco, S. Homma, E. Cabezas, J. Stuart, D.W. Hoyt, A.C. Satterthwait, M. Llinás, J.C. Reed & K.R. Ely (2001). "Structural Analysis of BAG1 Cochaperone and its Interactions with Hsc70 Heat Shock Protein." Nature Struct. Biol. 8, 349-352.

C.-K. Hu, E. Agner, L. Örning, K.S. Sakariassen, R.W. Stephens, M. Llinás & P.M. Fischer (2001) "Synthesis, Biological Activity, and Solution Structures of a Cyclic Dodecapeptide from the EGF2-Domain of Blood Coagulation Factor VII." J. Peptide Res. 57, 462-472 .

D.N. Marti, J. Schaller & M. Llinás (1999) "Solution Structure and Dynamics of the Plasminogen Kringle 2-AMCHA Complex: 31-Helix in Homologous Domains." Biochemistry 38, 15741-15755.

K. Briknarová, A. Grishaev, L. Bányai, H. Tordai, L. Patthy & M. Llinás (1999) "The Second type II Module from Human Matrix Metalloproteinase 2: Structure, Function and Dynamics" Structure 7, 1235-1245.

L.V. Medved, M. Migliorini, I. Michailenko, L.G. Barrientos, M. Llinás & D. Strickland (1999) "Domain Organization of the 39-kDa Receptor-associated Protein" J. Biol. Chem. 274, 717-727.

V.O. Lewis, M. Gehrmann, L. Weissbach, J.E. Hyman, A. Rielly, D.G. Jones, M. Llinás & J. Schaller (1999) "Homologous Plasminogen N-Terminal and Plasminogen-Related Gene A and B Peptides: Characterization of cDNAs and Recombinant Fusion Proteins" Eur. J. Biochem. 259, 618-625.

W.R. Ji, F.J. Castellino, Y. Chang, M.E. DeFord, H. Gray, X. Villarreal, M.E. Kondri, D.N. Marti, M. Llinás, J. Schaller, R.A. Kramer & P.A. Trail (1998). "Characterization of Kringle Domains of Angiostatin as Antagonists of Endothelial Cell Migration, an Important Process in Angiogenesis". FASEB Journal 12, 1731-1738. 

S.S.A. An, C. Carreño, D.N. Marti, J. Schaller, F. Albericio & M. Llinás (1998). "Lysine-50 is a Likely Site for Anchoring the Plasminogen N-terminal Peptide to Lysine-Binding Kringles.". Protein Science 7, 1960-1969. 

S.S.A. An, D.N. Marti, C. Carreño, F. Albericio, J. Schaller & M. Llinás (1998). "Structural/Functional Properties of the Glu1-HSer57 N-terminal Fragment of Human Plasminogen: Conformational Characterization and Interaction with Kringle Domains." Protein Science 7, 1947-1959. 

W.R. Ji, L.G. Barrientos, M. Llinás, H. Gray, X. Villarreal, M.E. DeFord, F.J. Castellino R.A. Kramer & P.A. Trail (1998). "Selective Inhibition by Kringle 5 of Human Plasminogen on Endothelial Cell Migration, an Important Process in Angiogenesis". Biochem. Biophys. Res. Commun. 247, 414-419. 

D.N. Marti, C.-K. Hu, S.S.A. An, P. von Haller, J. Schaller & M. Llinás (1997). "Ligand Preference of Kringle 2 and Homologous Domains of Human Plasminogen: Canvassing Weak, Intermediate and High Affinity Binding Sites by 1H-NMR". Biochemistry  36, 11591-11604. 

Y. Cao, A. Chien, S.S.A. An, R.W. Ji, D. Davidson, Y. Cao & M. Llinás (1997). "Kringle 5 of Plasminogen: A Novel Inhibitor of Endothelial Cell Growth". J. Biol. Chem. 272, 22924-22928. 

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